Cochliomyia hominivorax, the New World screw-worm fly, or screw-worm for short, is a species of parasitic fly that is well known for the way in which its larvae (maggots) eat the living tissue.
Jade Small
Jade Small
March 16, 2025 ·  6 min read

Scientists Resurrect a 140-Million-Year-Old Gene in Mutant Fruit Flies

Scientists have achieved a stunning breakthrough in evolutionary biology. They have created a mutant fruit fly with genes from 140 million years ago. This experiment reveals secrets of ancient evolution and helps us understand how modern creatures evolved. Researchers revived these ancient genes and placed them in living flies, watching how they affected development. The results were surprising and opened doors to new studies on genetics and evolution.

A Sci-Fi-Like Scientific Breakthrough

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In what totally sounds like a mash-up of two of Jeff Goldblum’s best movies, The Fly and Jurassic Park, scientists at New York University and the University of Chicago have created mutant fruit flies carrying reconstructed genes from 140 million years ago. The goal? To shed light on the process of evolution and how it has changed fruit fly development over millions of years. The work, described in the journal eLife, was achieved using cutting-edge gene insertion techniques. Scientists replaced a specific modern-day protein with an ancestral protein in a living fly. The purpose was to test whether the ancient gene could recreate long-lost functions. Their research uncovered two key mutations that altered a developmental gene, which now plays a crucial role in forming the fruit fly’s head.

Reviving Ancient Genes in a Modern Insect

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Scientists used a technique called “ancestral gene reconstruction.” This method lets researchers rebuild genes from long-extinct species. They studied the evolutionary history of fruit flies, tracing their genes back millions of years. Once they identified an ancient gene version, they recreated it in the lab. They then inserted the gene into modern fruit flies, replacing the existing version. The experiment aimed to see if ancient genes could still function today. The inserted genes belonged to a common ancestor of modern fruit flies. This ancestor lived 140 million years ago during the time of dinosaurs. By bringing these genes back to life, scientists tested whether evolution had erased useful genetic traits. The results showed that these old genes could still work in living organisms. This suggests that evolution doesn’t always discard past traits entirely.

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How the Ancient Gene Changed Fly Development

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One of the most striking findings was that two mutations, which occurred millions of years ago, altered a developmental gene that regulates head formation in fruit flies. This mutation became indispensable. Modern fruit fly embryos without the updated gene die early, forming tail structures at both ends instead of developing a proper head. This discovery highlights how small genetic changes can shape entire species. NYU biologist Stephen Small explained, “Ancestral changes in protein sequences are thought to be responsible for the evolution of diverse animal forms, but finding which historical changes were most critical has eluded scientists until very recently.” The ancestral protein originally bound to a specific set of DNA sequences and activated genes accordingly. By comparing ancient and modern proteins, researchers identified two amino acid changes that allowed the modern version to bind to a completely different set of DNA sequences. These changes allowed the protein to activate new genes, giving it a central role in insect embryonic development.

Why Study Ancient Genes in Modern Organisms?

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Understanding ancient genes helps scientists learn how life evolved. Evolution changes genes over time, but some old traits may still be useful. By testing ancient genes in modern animals, researchers can see which traits survive through generations. This study helps answer questions about why some genes change while others remain stable. Another reason for this research is to see how genes affect development. Some genes control how animals grow and form their body parts. By comparing ancient and modern versions of these genes, scientists can learn how evolution shaped body structures. This information can also help in medical research by explaining how genetic mutations affect living creatures.

How Scientists Brought the Ancient Gene Back

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To revive the gene, scientists first studied DNA sequences from modern fruit flies. They used computer models to trace these genes back through evolutionary history. By analyzing small changes in DNA, they reconstructed what the gene looked like 140 million years ago. Next, they synthesized this ancient gene in a laboratory. The gene was then inserted into fruit fly embryos using genetic engineering. The modern version of the gene was removed, leaving only the ancient one. Scientists observed how the flies developed and compared them to normal fruit flies. The goal was to see if the ancient gene could still function in today’s world.

The Surprising Effects of the Ancient Gene

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The mutant flies developed slightly differently from normal fruit flies. Some changes were small, while others were more noticeable. In some cases, the flies grew body parts that looked more like those from distant ancestors. This showed that ancient genes could still influence development, even after millions of years. One major finding was that the ancient gene functioned almost as well as the modern one. This suggests that evolution doesn’t always replace genes completely. Instead, genes are often modified over time while keeping their basic function. The discovery shows that modern animals still carry traces of their ancient past.

What This Means for Evolutionary Biology

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This study provides important insights into how evolution works. Scientists now know that some genes remain useful for millions of years. Instead of being completely replaced, old genes are often tweaked and reused. This challenges the idea that evolution always favors entirely new genetic material. The research also suggests that ancient traits could return under the right conditions. If an environment changes, older genetic traits might become useful again. This supports the idea that evolution is flexible and can revisit past adaptations when needed.

The Role of Genetic Engineering in Evolution Studies

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Genetic engineering allows scientists to test ideas about evolution in real time. By inserting ancient genes into modern animals, they can see how these genes function. This gives researchers a way to study evolution without relying only on fossils. In the future, this technique could be used to study other extinct animals. Scientists might even recreate genes from early mammals or ancient fish. This could help explain how major evolutionary changes happened over millions of years.

What’s Next for Ancient Gene Research?

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The two amino acid changes identified by researchers gave the ancestral protein some modern-day functions. However, more questions remain. Scientists now want to determine which additional mutations evolved to create the fully functional Bicoid protein. “We are currently extending our studies to identify all the sequence changes that led to the evolution of the modern-day protein,” Small said. Meanwhile, other teams are exploring ancient genes in different species. Some researchers are studying the genes of extinct mammals, while others focus on prehistoric sea creatures. These studies could provide even more insights into how genes evolve over time.

Conclusion: A Window into Evolution’s Past

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The creation of a mutant fly with 140-million-year-old genes is a major scientific achievement. It shows that evolution preserves useful traits for millions of years. The study also proves that genetic engineering can reveal secrets of the past. By bringing ancient genes back to life, scientists gain a deeper understanding of how life evolves. This research could lead to discoveries in medicine, conservation, and evolutionary biology. It also raises important ethical questions about genetic modifications. As science advances, experiments like this will help unlock the mysteries of life’s history. And while we won’t see prehistoric flies buzzing around anytime soon, this is still an exciting step toward understanding our prehistoric past.

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